[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 98 items for (author: rosenthal & pb)

EMDB-17001:
In-situ structure of the hexameric HEF trimers from influenza C viral particles
Method: subtomogram averaging / : Liu ZB, Rosenthal PB

EMDB-18916:
Cryotomogram of mature Vaccinia virus (WR) virion
Method: electron tomography / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-18917:
Subtomogram average of the Vaccinia virus (WR) portal complex in mature virions
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-18918:
Subtomogram average of the Vaccinia virus (WR) A4/A10 palisade trimer in mature virions
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-16150:
8:1 binding of FcMR on IgM pentameric core
Method: single particle / : Chen Q, Rosenthal P, Tolar P

EMDB-16151:
FcMR binding at subunit Fcu1 of IgM pentamer
Method: single particle / : Chen Q, Rosenthal P, Tolar P

EMDB-16152:
FcMR binding at subunit Fcu3 of IgM pentamer
Method: single particle / : Chen Q, Rosenthal P, Tolar P

EMDB-15596:
In situ subtomogram average of Vaccinia virus (WR) palisade, all virions
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-15597:
In situ subtomogram average of Vaccinia virus (WR) palisade, from CEVs
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-15598:
In situ subtomogram average of Vaccinia virus (WR) palisade, from IMVs
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-15599:
In situ subtomogram average of Vaccinia virus (WR) palisade, from IEVs
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-15600:
Cryotomogram of Vaccinia virus (WR) infected HeLa cell (immature virions)
Method: electron tomography / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-15601:
Cryotomogram of Vaccinia virus (WR) infected HeLa cell (mature virions)
Method: electron tomography / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-15602:
In situ subtomogram average of Vaccinia virus (WR) D13 lattice, on immature virions
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-15181:
Prefusion spike of SARS-CoV-2 (Wuhan), closed conformation
Method: subtomogram averaging / : Calder LJ, Calcraft T, Hussain S, Harvey R, Rosenthal PB

EMDB-15182:
Electron cryotomography of SARS-CoV-2 virions
Method: electron tomography / : Calder LJ, Calcraft T, Hussain S, Harvey R, Rosenthal PB

EMDB-15183:
Whole SARS-CoV-2 (Wuhan) virion
Method: subtomogram averaging / : Calder LJ, Calcraft T, Hussain S, Harvey R, Rosenthal PB

EMDB-15185:
Prefusion spike of SARS-CoV-2 (Wuhan), 1-RBD-up conformation
Method: subtomogram averaging / : Calder LJ, Calcraft T, Hussain S, Harvey R, Rosenthal PB

EMDB-13921:
Cryo-EM structure of full-length human immunoglobulin M
Method: single particle / : Chen Q, Rosenthal P, Tolar P

EMDB-13922:
Cryo-EM structure of human monomeric IgM-Fc
Method: single particle / : Chen Q, Rosenthal P, Tolar P

EMDB-15375:
Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 1
Method: single particle / : Chen Q, Rosenthal P, Tolar P

EMDB-15376:
Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 2
Method: single particle / : Chen Q, Rosenthal P, Tolar P

EMDB-15377:
Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 3
Method: single particle / : Chen Q, Rosenthal P, Tolar P

EMDB-15379:
Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 5
Method: single particle / : Chen Q, Rosenthal P, Tolar P

EMDB-15380:
Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 4
Method: single particle / : Chen Q, Rosenthal P, Tolar P

EMDB-14742:
X-31 Hemagglutinin Precursor HA0 at pH 7.5
Method: single particle / : Garcia-Moro E, Rosenthal PB

EMDB-14743:
X-31 Hemagglutinin Precursor HA0 at pH 4.8
Method: single particle / : Garcia-Moro E, Rosenthal PB

EMDB-14744:
X-31 Hemagglutinin Precursor HA0 at pH 7.5 after reneutralization
Method: single particle / : Garcia-Moro E, Rosenthal PB

EMDB-14225:
Dissociated S1 domain of Alpha Variant SARS-CoV-2 Spike bound to ACE2 (Non-Uniform Refinement)
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14227:
Dissociated S1 domain of Beta Variant SARS-CoV-2 Spike bound to ACE2 (Non-Uniform Refinement)
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14228:
Dissociated S1 domain of Mink Variant SARS-CoV-2 Spike bound to ACE2 (Non-Uniform Refinement)
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14229:
Alpha Variant SARS-CoV-2 Spike in Closed conformation
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14230:
Alpha Variant SARS-CoV-2 Spike with 1 Erect RBD
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14232:
Beta Variant SARS-CoV-2 Spike with 1 Erect RBD
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14233:
Beta Variant SARS-CoV-2 Spike with 2 Erect RBDs
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14234:
Mink Variant SARS-CoV-2 Spike in Closed conformation
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14235:
Mink Variant SARS-CoV-2 Spike with 2 Erect RBDs
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14237:
Mink Variant SARS-CoV-2 Spike with 1 Erect RBD
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14226:
Dissociated S1 domain of Alpha Variant SARS-CoV-2 Spike bound to ACE2
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14231:
Alpha Variant SARS-CoV-2 Spike with 2 Erect RBDs
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-14236:
Furin Cleaved Alpha Variant SARS-CoV-2 Spike in complex with 3 ACE2
Method: single particle / : Benton DJ, Wrobel AG, Gamblin SJ

EMDB-12585:
Trimeric SARS-CoV-2 spike ectodomain in complex with biliverdin (closed conformation)
Method: single particle / : Rosa A, Pye VE, Nans A, Cherepanov P

EMDB-12586:
Trimeric SARS-CoV-2 spike ectodomain in complex with biliverdin (one RBD erect)
Method: single particle / : Rosa A, Pye VE, Nans A, Cherepanov P

EMDB-12587:
Trimeric SARS-CoV-2 spike ectodomain bound to P008_056 Fab
Method: single particle / : Rosa A, Pye VE, Nans A, Cherepanov P

EMDB-11928:
SctV (SsaV) cytoplasmic domain
Method: single particle / : Matthews-Palmer TRS, Gonzalez-Rodriguez N, Calcraft T, Lagercrantz S, Zachs T, Yu XJ, Grabe G, Holden D, Nans A, Rosenthal P, Rouse S, Beeby M

EMDB-10810:
In-situ structure of the trimeric HEF from influenza C viral particles with a matrix layer by cryo-ET
Method: subtomogram averaging / : Halldorsson S, Rosenthal PB

EMDB-10811:
In-situ structure of a dimer of the trimeric HEF from influenza C viral particles containing a matrix layer by cryo-ET
Method: subtomogram averaging / : Halldorsson S, Rosenthal PB

EMDB-10812:
In-situ structure of the trimeric HEF from influenza C viral particles without a matrix layer by cryo-ET
Method: subtomogram averaging / : Halldorsson S, Rosenthal PB

EMDB-10813:
In-situ structure of a dimer of the trimeric HEF from influenza C viral particles without a matrix layer by cryo-ET
Method: subtomogram averaging / : Halldorsson S, Rosenthal PB

EMDB-10814:
In-situ structure of HEF from filamentous influenza C viral particles by cryo-ET
Method: subtomogram averaging / : Halldorsson S, Rosenthal PB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more